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  T3 Wheat Sandbox

Genotyping experiment VRND4_UCD_2015

Description

Experiment Short NameVRND4_2015
PlatformInfinium 90K
Data ProgramUSDA-ARS, North Dakota (NDG)
Breeding ProgramUC Davis (UCD)
OPA Namen/a
Processing Date05/01/2015
SoftwareIllumina Genome Studio
Software version2010.3
CommentsKippes N., J.M. Debernardi, H. Vasquez-Gross, B.A. Akpinar, B.H., K. Kato, S. Chao, E. Akhunov and J. Dubcovsky. 2015. Identification of the VERNALIZATION 4 gene reveals the origin of spring growth habit in ancient wheats from South Asia. Proc. Natl. Acad. Sci. U.S.A. 112: E5401 to E5410.

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16371 markers were assayed for 80 lines.
(lines and markers)

Removed by filteringRemaining
1 markers have a minor allele frequency (MAF) less than 5%
135 markers are missing more than 10% of data
136 markers removed
16235 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)
Manifest (markers used)
Cluster File
Raw data

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